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    zgc:112234 zgc:112234 [ Danio rerio (zebrafish) ]

    Gene ID: 554097, updated on 27-Mar-2024

    Summary

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    Official Symbol
    zgc:112234provided by ZNC
    Official Full Name
    zgc:112234provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-106
    See related
    AllianceGenome:ZFIN:ZDB-GENE-050522-106
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human H2BC19P (H2B clustered histone 19, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
    Annotation information
    Annotation category: only annotated on alternate loci in reference assembly
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 15 Unlocalized Scaffold (ALT_DRER_TU_1) NW_018394946.1 (99730..100437)

    NW_018394946.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 3-like 2b Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 14Ab Neighboring gene serine peptidase inhibitor, Kunitz type, 2 Neighboring gene uncharacterized LOC110439004 Neighboring gene uncharacterized LOC110439005

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018394946.1 Chromosome 15 Reference GRCz11 ALT_DRER_TU_1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Clone Names

    • MGC153598, MGC153715

    General protein information

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    Preferred Names
    uncharacterized protein LOC554097

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024398.2 → NP_001019569.2  uncharacterized protein LOC554097

      See identical proteins and their annotated locations for NP_001019569.2

      Status: PREDICTED

      Source sequence(s)
      BC124434
      UniProtKB/TrEMBL
      A0A0R4IPL4, A0A8N7XJ31, F1R0S5, Q05AK8
      Conserved Domains (1) summary
      smart00427
      Location:26 → 122
      H2B; Histone H2B

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394946.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      99730..100437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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